Karya
Judul/Title Global Population Structure of Apple Mosaic Virus (ApMV, Genus Ilarvirus)
Penulis/Author Ali Celik (1); Ali Ferhan Morca (2); Sevgi Coskan (3); Dr. Adyatma Irawan Santosa, S.P., M.Sc. (4)
Tanggal/Date 23 2023
Kata Kunci/Keyword
Abstrak/Abstract The gene sequence data for apple mosaic virus (ApMV) in NCBI GenBank were analyzed to determine the phylogeny and population structure of the virus at a global level. The phylogenies of the movement protein (MP) and coat protein (CP) genes, encoded by RNA3, were shown to be identical and consisted of three lineages but did not closely correlate with those of P1 and P2, suggesting the presence of recombinant isolates. Recombination Detection Program (RDP v.4.56) detected significant recombination signal in the P1 region of K75R1 (KY883318) and Apple (HE574162) and the P2 region of Apple (HE574163) and CITH GD (MN822138). Observation on several diversity parameters suggested that the isolates in group 3 had higher divergence among them, compared to isolates in groups 1 and 2. The neutrality tests assigned positive values to P1, indicating that only this region experiencing balanced or contracting selection. Comparisons of the three phylogroups demonstrated high Fixation index (FST) values and confirmed genetic separation and the lack of gene flow among them. Additionally, ±500 bp of partial MP + ‘intergenic region’ + partial CP coding regions of two Turkish isolates from apple and seven from hazelnut were sequenced and determined that their phylogenetic positions fell within group 1 and 3, respectively.
Rumpun Ilmu Ilmu Hama dan Penyakit Tanaman
Bahasa Asli/Original Language English
Level Internasional
Status
Dokumen Karya
No Judul Tipe Dokumen Aksi
1Çelik etal2023-Global population structure of ApMV.pdf[PAK] Full Dokumen
2Korespondensi lengkap-Global Population Structure of apple mosaic virus (ApMV, genus Ilarvirus).pdf[PAK] Bukti Korespondensi Penulis